Detailed information of SNP:



SNP ID: sf0501482225(Gbrowse)

Chromosome: chr05

Position: 1482225
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1411 80.44% 19.56%
All Indica798 94.11% 5.89%
All Japonica491 68.43% 31.57%
Aus67 32.84% 67.16%
Indica I375 97.07% 2.93%
Indica II212 90.57% 9.43%
Indica Intermediate211 92.42% 7.58%
Temperate Japonica332 90.06% 9.94%
Tropical Japonica92 10.87% 89.13%
Japonica Intermediate67 40.30% 59.70%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0501482225 T->C LOC_Os05g03500(LOC_Os05g03500.1) Synonymous