Detailed information of SNP:
|
SNP ID:
sf0501482225(Gbrowse)
Chromosome: chr05 Position: 1482225 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 80.44% | 19.56% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 491 | 68.43% | 31.57% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 332 | 90.06% | 9.94% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501482225 | T->C | LOC_Os05g03500(LOC_Os05g03500.1) | Synonymous |