Detailed information of SNP:
|
SNP ID:
sf0501489838(Gbrowse)
Chromosome: chr05 Position: 1489838 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.72% | 32.28% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501489838 | A->G | LOC_Os05g03520(LOC_Os05g03520.1) | Synonymous |