Detailed information of SNP:
|
SNP ID:
sf0501490285(Gbrowse)
Chromosome: chr05 Position: 1490285 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 78.16% | 21.84% |
| All Indica | 797 | 90.97% | 9.03% |
| All Japonica | 496 | 66.73% | 33.27% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501490285 | A->C | LOC_Os05g03520(LOC_Os05g03520.1) | Non-Synonymous SNP |