Detailed information of SNP:
|
SNP ID:
sf0501493401(Gbrowse)
Chromosome: chr05 Position: 1493401 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 53.63% | 46.37% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 494 | 4.25% | 95.75% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501493401 | C->T | INTERGENIC | None |