Detailed information of SNP:



SNP ID: sf0501503814(Gbrowse)

Chromosome: chr05

Position: 1503814
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 68.27% 31.73%
All Indica799 84.23% 15.77%
All Japonica497 36.62% 63.38%
Aus67 100.00% 0.00%
Indica I375 93.33% 6.67%
Indica II213 63.85% 36.15%
Indica Intermediate211 88.63% 11.37%
Temperate Japonica335 11.34% 88.66%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 79.41% 20.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0501503814 T->C LOC_Os05g03550(LOC_Os05g03550.1) Non-Synonymous SNP