Detailed information of SNP:
|
SNP ID:
sf0501503814(Gbrowse)
Chromosome: chr05 Position: 1503814 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.27% | 31.73% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 497 | 36.62% | 63.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501503814 | T->C | LOC_Os05g03550(LOC_Os05g03550.1) | Non-Synonymous SNP |