Detailed information of SNP:
|
SNP ID:
sf0501506443(Gbrowse)
Chromosome: chr05 Position: 1506443 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 95.28% | 4.72% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 478 | 87.66% | 12.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 80 | 48.75% | 51.25% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501506443 | G->A | LOC_Os05g03550(LOC_Os05g03550.1) | INTRON |