Detailed information of SNP:
|
SNP ID:
sf0501509041(Gbrowse)
Chromosome: chr05 Position: 1509041 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.12% | 45.88% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501509041 | G->A | INTERGENIC | None |