Detailed information of SNP:
|
SNP ID:
sf0501517041(Gbrowse)
Chromosome: chr05 Position: 1517041 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.44% | 11.56% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501517041 | C->A | LOC_Os05g03574(LOC_Os05g03574.3) | INTRON |
| sf0501517041 | C->A | LOC_Os05g03574(LOC_Os05g03574.2) | INTRON |
| sf0501517041 | C->A | LOC_Os05g03574(LOC_Os05g03574.1) | INTRON |