Detailed information of SNP:
|
SNP ID:
sf0501520967(Gbrowse)
Chromosome: chr05 Position: 1520967 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.86% | 46.14% |
| All Indica | 795 | 81.38% | 18.62% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501520967 | C->A | INTERGENIC | None |