Detailed information of SNP:
|
SNP ID:
sf0501522346(Gbrowse)
Chromosome: chr05 Position: 1522346 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 92.15% | 7.85% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 493 | 79.72% | 20.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 16.67% | 83.33% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501522346 | C->A | LOC_Os05g03590(LOC_Os05g03590.1) | Non-Synonymous SNP |