Detailed information of SNP:
|
SNP ID:
sf0501528918(Gbrowse)
Chromosome: chr05 Position: 1528918 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 67.14% | 32.86% |
| All Indica | 797 | 83.94% | 16.06% |
| All Japonica | 494 | 35.22% | 64.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501528918 | T->C | LOC_Os05g03600(LOC_Os05g03600.1) | Synonymous |