Detailed information of SNP:
|
SNP ID:
sf0501529859(Gbrowse)
Chromosome: chr05 Position: 1529859 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.29% | 44.71% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501529859 | T->C | INTERGENIC | None |