Detailed information of SNP:
|
SNP ID:
sf0501552234(Gbrowse)
Chromosome: chr05 Position: 1552234 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501552234 | C->T | INTERGENIC | None |