Detailed information of SNP:
|
SNP ID:
sf0501552409(Gbrowse)
Chromosome: chr05 Position: 1552409 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501552409 | G->T | INTERGENIC | None |