Detailed information of SNP:
|
SNP ID:
sf0501558983(Gbrowse)
Chromosome: chr05 Position: 1558983 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.02% | 42.98% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501558983 | G->A | INTERGENIC | None |