Detailed information of SNP:
|
SNP ID:
sf0501560512(Gbrowse)
Chromosome: chr05 Position: 1560512 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 59.55% | 40.45% |
| All Indica | 794 | 97.48% | 2.52% |
| All Japonica | 491 | 1.43% | 98.57% |
| Aus | 7 | 28.57% | 71.43% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501560512 | G->C | INTERGENIC | None |