Detailed information of SNP:
|
SNP ID:
sf0501563137(Gbrowse)
Chromosome: chr05 Position: 1563137 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1288 | 52.64% | 47.36% |
| All Indica | 672 | 86.61% | 13.39% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 330 | 91.52% | 8.48% |
| Indica II | 153 | 76.47% | 23.53% |
| Indica Intermediate | 189 | 86.24% | 13.76% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501563137 | G->A | LOC_Os05g03640(LOC_Os05g03640.1) | INTRON |