Detailed information of SNP:
|
SNP ID:
sf0501568585(Gbrowse)
Chromosome: chr05 Position: 1568585 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.75% | 30.25% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501568585 | T->C | INTERGENIC | None |