Detailed information of SNP:
|
SNP ID:
sf0501575150(Gbrowse)
Chromosome: chr05 Position: 1575150 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 91.23% | 8.77% |
| All Indica | 796 | 86.93% | 13.07% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501575150 | A->G | INTERGENIC | None |