Detailed information of SNP:
|
SNP ID:
sf0501584662(Gbrowse)
Chromosome: chr05 Position: 1584662 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.22% | 35.78% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501584662 | A->G | LOC_Os05g03660(LOC_Os05g03660.1) | Synonymous |