Detailed information of SNP:
|
SNP ID:
sf0501585770(Gbrowse)
Chromosome: chr05 Position: 1585770 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.36% | 30.64% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 22.46% | 77.54% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501585770 | A->G | INTERGENIC | None |