Detailed information of SNP:
|
SNP ID:
sf0501589909(Gbrowse)
Chromosome: chr05 Position: 1589909 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 61.19% | 38.81% |
| All Indica | 770 | 92.47% | 7.53% |
| All Japonica | 491 | 16.90% | 83.10% |
| Aus | 30 | 20.00% | 80.00% |
| Indica I | 361 | 91.69% | 8.31% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 200 | 96.00% | 4.00% |
| Temperate Japonica | 334 | 23.35% | 76.65% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 37 | 48.65% | 51.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501589909 | T->C | LOC_Os05g03670(LOC_Os05g03670.1) | Non-Synonymous SNP |