Detailed information of SNP:
|
SNP ID:
sf0501597965(Gbrowse)
Chromosome: chr05 Position: 1597965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 50.65% | 49.35% |
| All Indica | 758 | 88.79% | 11.21% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 357 | 91.88% | 8.12% |
| Indica II | 200 | 84.50% | 15.50% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501597965 | G->A | INTERGENIC | None |