Detailed information of SNP:
|
SNP ID:
sf0501598001(Gbrowse)
Chromosome: chr05 Position: 1598001 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 58.83% | 41.17% |
| All Indica | 781 | 90.27% | 9.73% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 364 | 92.31% | 7.69% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501598001 | T->C | INTERGENIC | None |