Detailed information of SNP:



SNP ID: sf0501601225(Gbrowse)

Chromosome: chr05

Position: 1601225
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 94.57% 5.43%
All Indica799 99.62% 0.38%
All Japonica496 85.08% 14.92%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 78.44% 21.56%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0501601225 C->T INTERGENIC None