Detailed information of SNP:
|
SNP ID:
sf0501608545(Gbrowse)
Chromosome: chr05 Position: 1608545 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.95% | 37.05% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501608545 | T->C | LOC_Os05g03690(LOC_Os05g03690.1) | Non-Synonymous SNP |