Detailed information of SNP:
|
SNP ID:
sf0501612208(Gbrowse)
Chromosome: chr05 Position: 1612208 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 54.28% | 45.72% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501612208 | G->C | INTERGENIC | None |