Detailed information of SNP:



SNP ID: sf0501641415(Gbrowse)

Chromosome: chr05

Position: 1641415
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 62.48% 37.52%
All Indica799 98.12% 1.88%
All Japonica497 2.41% 97.59%
Aus67 95.52% 4.48%
Indica I375 100.00% 0.00%
Indica II213 94.37% 5.63%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 6.38% 93.62%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 21.43% 78.57%
Intermediate41 56.10% 43.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0501641415 T->C INTERGENIC None