Detailed information of SNP:
SNP ID:
sf0501641415(Gbrowse)
Chromosome: chr05 Position: 1641415 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 62.48% | 37.52% |
All Indica | 799 | 98.12% | 1.88% |
All Japonica | 497 | 2.41% | 97.59% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 94.37% | 5.63% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 6.38% | 93.62% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0501641415 | T->C | INTERGENIC | None |