Detailed information of SNP:
|
SNP ID:
sf0501672144(Gbrowse)
Chromosome: chr05 Position: 1672144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 98.25% | 1.75% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 453 | 94.70% | 5.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 92.16% | 7.84% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501672144 | C->T | INTERGENIC | None |