Detailed information of SNP:
|
SNP ID:
sf0501704664(Gbrowse)
Chromosome: chr05 Position: 1704664 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.30% | 44.70% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501704664 | C->T | INTERGENIC | None |