Detailed information of SNP:
|
SNP ID:
sf0501722271(Gbrowse)
Chromosome: chr05 Position: 1722271 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 60.23% | 39.77% |
| All Indica | 790 | 41.52% | 58.48% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 41.71% | 58.29% |
| Indica II | 208 | 39.90% | 60.10% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501722271 | A->C | INTERGENIC | None |