Detailed information of SNP:
|
SNP ID:
sf0501750122(Gbrowse)
Chromosome: chr05 Position: 1750122 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.81% | 24.19% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 34.07% | 65.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501750122 | T->G | INTERGENIC | None |