Detailed information of SNP:
|
SNP ID:
sf0501751485(Gbrowse)
Chromosome: chr05 Position: 1751485 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 69.96% | 30.04% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 493 | 31.85% | 68.15% |
| Aus | 62 | 6.45% | 93.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 22.89% | 77.11% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501751485 | T->C | INTERGENIC | None |