Detailed information of SNP:
|
SNP ID:
sf0501764733(Gbrowse)
Chromosome: chr05 Position: 1764733 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 94.43% | 5.57% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 480 | 93.33% | 6.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 329 | 96.96% | 3.04% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 62 | 85.48% | 14.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501764733 | C->T | INTERGENIC | None |