Detailed information of SNP:
|
SNP ID:
sf0501779674(Gbrowse)
Chromosome: chr05 Position: 1779674 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.79% | 37.21% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 25.07% | 74.93% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501779674 | A->T | INTERGENIC | None |