Detailed information of SNP:
|
SNP ID:
sf0501779939(Gbrowse)
Chromosome: chr05 Position: 1779939 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 92.52% | 7.48% |
| All Indica | 788 | 88.71% | 11.29% |
| All Japonica | 488 | 98.36% | 1.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 202 | 80.20% | 19.80% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 62 | 88.71% | 11.29% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501779939 | A->G | INTERGENIC | None |