Detailed information of SNP:
|
SNP ID:
sf0501780022(Gbrowse)
Chromosome: chr05 Position: 1780022 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 67.41% | 32.59% |
| All Indica | 787 | 86.40% | 13.60% |
| All Japonica | 493 | 34.48% | 65.52% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 202 | 72.28% | 27.72% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 332 | 24.40% | 75.60% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501780022 | G->A | INTERGENIC | None |