Detailed information of SNP:
|
SNP ID:
sf0501780309(Gbrowse)
Chromosome: chr05 Position: 1780309 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 87.74% | 12.26% |
| All Indica | 791 | 88.12% | 11.88% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 205 | 77.56% | 22.44% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501780309 | C->T | INTERGENIC | None |