Detailed information of SNP:
|
SNP ID:
sf0501783547(Gbrowse)
Chromosome: chr05 Position: 1783547 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 80.44% | 19.56% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 66.20% | 33.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501783547 | A->G | INTERGENIC | None |