Detailed information of SNP:
|
SNP ID:
sf0501785199(Gbrowse)
Chromosome: chr05 Position: 1785199 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 53.63% | 46.37% |
| All Indica | 785 | 90.83% | 9.17% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 200 | 87.50% | 12.50% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501785199 | C->T | LOC_Os05g03972(LOC_Os05g03972.1) | UTR_3_PRIME |