Detailed information of SNP:
|
SNP ID:
sf0501786379(Gbrowse)
Chromosome: chr05 Position: 1786379 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 91.60% | 8.40% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501786379 | T->C | LOC_Os05g03972(LOC_Os05g03972.1) | Non-Synonymous SNP |