Detailed information of SNP:
|
SNP ID:
sf0501791106(Gbrowse)
Chromosome: chr05 Position: 1791106 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501791106 | C->T | LOC_Os05g03972(LOC_Os05g03972.1) | Synonymous |