Detailed information of SNP:
|
SNP ID:
sf0501793686(Gbrowse)
Chromosome: chr05 Position: 1793686 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 91.93% | 8.07% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 61 | 11.48% | 88.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501793686 | T->C | LOC_Os05g03984(LOC_Os05g03984.1) | INTRON |