Detailed information of SNP:
|
SNP ID:
sf0501795063(Gbrowse)
Chromosome: chr05 Position: 1795063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 50.18% | 49.82% |
| All Indica | 794 | 85.14% | 14.86% |
| All Japonica | 494 | 1.62% | 98.38% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 208 | 68.75% | 31.25% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501795063 | G->A | INTERGENIC | None |