Detailed information of SNP:
|
SNP ID:
sf0501802965(Gbrowse)
Chromosome: chr05 Position: 1802965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1237 | 75.02% | 24.98% |
| All Indica | 626 | 52.08% | 47.92% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 280 | 38.93% | 61.07% |
| Indica II | 168 | 71.43% | 28.57% |
| Indica Intermediate | 178 | 54.49% | 45.51% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501802965 | G->A | INTERGENIC | None |