Detailed information of SNP:
|
SNP ID:
sf0501804768(Gbrowse)
Chromosome: chr05 Position: 1804768 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.92% | 49.08% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501804768 | A->T | LOC_Os05g04020(LOC_Os05g04020.1) | INTRON |