Detailed information of SNP:
|
SNP ID:
sf0501807481(Gbrowse)
Chromosome: chr05 Position: 1807481 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 797 | 17.31% | 82.69% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 3.22% | 96.78% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501807481 | C->T | LOC_Os05g04020(LOC_Os05g04020.1) | INTRON |