Detailed information of SNP:
|
SNP ID:
sf0501807576(Gbrowse)
Chromosome: chr05 Position: 1807576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 96.21% | 3.79% |
| All Indica | 780 | 95.38% | 4.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 199 | 91.96% | 8.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501807576 | G->A | LOC_Os05g04020(LOC_Os05g04020.1) | INTRON |