Detailed information of SNP:
|
SNP ID:
sf0501807693(Gbrowse)
Chromosome: chr05 Position: 1807693 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1328 | 94.95% | 5.05% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 409 | 83.86% | 16.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 260 | 76.15% | 23.85% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 62 | 95.16% | 4.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501807693 | C->G | LOC_Os05g04020(LOC_Os05g04020.1) | INTRON |