Detailed information of SNP:
|
SNP ID:
sf0501809077(Gbrowse)
Chromosome: chr05 Position: 1809077 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 63.38% | 36.62% |
| All Indica | 792 | 82.58% | 17.42% |
| All Japonica | 495 | 42.63% | 57.37% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501809077 | C->T | LOC_Os05g04020(LOC_Os05g04020.1) | Non-Synonymous SNP |